2008-04-23
自己紹介
SAIX (sh.saix at gmail.com)
研究分野：Research Area
> グラフィカルモデルに関する研究
> がんバイオマーカー探索・がん治療標的探索
開発言語・アプリ：Development Language・Developed Application
> Pearl, Shell Script, C/C++, JAVA, R
> Hierarchical Clustering, Graphical Gaussian Modeling, PC-Algorithm, Bayesian Network, d-Sep Test, Recursive Feature Elimination, Neighborhood Analysis+Weighted Vote, FWER & FDR, Z-Test, Hypergeometric-Test
論文：Journal & Proceedings
> Katoh H, Ojima H, Kokubu A, Saito S, Kondo T, Kosuge T, Hosoda F, Imoto I, Inazawa J, Hirohashi S, Shibata T: Genetically distinct and clinically relevant classification of hepatocellular carcinoma: putative therapeutic targets. Gastroenterology. 133:1475-86, 2007
> Aburatani S, Sun F, Saito S, Honda M, Kaneko S, Horimoto K: Gene systems network inferred from expression profiles in hepatocellular carcinogenesis by graphical Gaussian model. EURASIP Journal on Bioinformatics and Systems Biology. accepted, 2007
> Saito S, Aburatani S, Horimoto K: Modification of Path Consistency Algorithm to Detect Co-Expression Genes. Proceedings of the 10th World Multiconference on Systemics, Cybernetics and Informatics. accepted, 2006
> Aburatani S, Saito S, Toh H, Horimoto K: A Graphical Chain Modeling Approach for Analyzing Gene Expression Profiles. Statist. Method. 3:17-28, 2006
> Aburatani S, Saito S, Horimoto K: Graphical Models for Gene Expression Profile Analyses. Proceedings of the First International Conference on Algebraic Biology. 1, 2005
> Aburatani S, Goto K, Saito S, Toh H, Horimoto K: ASIAN: a Web Server for Inferring a Regulatory Network Framework from Gene Expression Profiles. Nucl. Acid. Res. 33:W659-W664, 2005
> Saito S, Aburatani S, Horimoto K: Network Inference Tool on Personal Computer. Proceedings of the 9th World Multiconference on Systemics, Cybernetics and Informatics. 8:21-24, 2005
> Aburatani S, Goto K, Saito S, Fumoto M, Imaizumi A, Sugaya N, Murakami H, Sato M, Toh H, Horimoto K: ASIAN: a web site for network inference. Bioinfomatics. 20:2853-2856, 2004
本：book
> マイクロアレイデータ統計解析プロトコール 〜 Excelを中心としたデータの標準化から有意差解析，クラスタリング， ネットワーク解析法のすべて. 羊土社, 2008
> Bioinformatics for Systems Biology 〜second edition to Introduction to Bioinformatics〜" ASIAN: Network Inference Web Server", Humana Press, in press (2009)
特許：Patents
> 特願2006-27247, 特開2007-207101: グラフ生成方法、グラフ生成プログラム並びにデータマイニングシステム
> 20070239415: GENERAL GRAPHICAL GAUSSIAN MODELING METHOD AND APPARATUS THEREFORE
> 20070203870: GRAPH GENERATING METHOD, GRAPH GENERATING PROGRAM AND DATA MINING SYSTEM
研究分野：Research Area
> グラフィカルモデルに関する研究
> がんバイオマーカー探索・がん治療標的探索
開発言語・アプリ：Development Language・Developed Application
> Pearl, Shell Script, C/C++, JAVA, R
> Hierarchical Clustering, Graphical Gaussian Modeling, PC-Algorithm, Bayesian Network, d-Sep Test, Recursive Feature Elimination, Neighborhood Analysis+Weighted Vote, FWER & FDR, Z-Test, Hypergeometric-Test
論文：Journal & Proceedings
> Katoh H, Ojima H, Kokubu A, Saito S, Kondo T, Kosuge T, Hosoda F, Imoto I, Inazawa J, Hirohashi S, Shibata T: Genetically distinct and clinically relevant classification of hepatocellular carcinoma: putative therapeutic targets. Gastroenterology. 133:1475-86, 2007
> Aburatani S, Sun F, Saito S, Honda M, Kaneko S, Horimoto K: Gene systems network inferred from expression profiles in hepatocellular carcinogenesis by graphical Gaussian model. EURASIP Journal on Bioinformatics and Systems Biology. accepted, 2007
> Saito S, Aburatani S, Horimoto K: Modification of Path Consistency Algorithm to Detect Co-Expression Genes. Proceedings of the 10th World Multiconference on Systemics, Cybernetics and Informatics. accepted, 2006
> Aburatani S, Saito S, Toh H, Horimoto K: A Graphical Chain Modeling Approach for Analyzing Gene Expression Profiles. Statist. Method. 3:17-28, 2006
> Aburatani S, Saito S, Horimoto K: Graphical Models for Gene Expression Profile Analyses. Proceedings of the First International Conference on Algebraic Biology. 1, 2005
> Aburatani S, Goto K, Saito S, Toh H, Horimoto K: ASIAN: a Web Server for Inferring a Regulatory Network Framework from Gene Expression Profiles. Nucl. Acid. Res. 33:W659-W664, 2005
> Saito S, Aburatani S, Horimoto K: Network Inference Tool on Personal Computer. Proceedings of the 9th World Multiconference on Systemics, Cybernetics and Informatics. 8:21-24, 2005
> Aburatani S, Goto K, Saito S, Fumoto M, Imaizumi A, Sugaya N, Murakami H, Sato M, Toh H, Horimoto K: ASIAN: a web site for network inference. Bioinfomatics. 20:2853-2856, 2004
本：book
> マイクロアレイデータ統計解析プロトコール 〜 Excelを中心としたデータの標準化から有意差解析，クラスタリング， ネットワーク解析法のすべて. 羊土社, 2008
> Bioinformatics for Systems Biology 〜second edition to Introduction to Bioinformatics〜" ASIAN: Network Inference Web Server", Humana Press, in press (2009)
特許：Patents
> 特願2006-27247, 特開2007-207101: グラフ生成方法、グラフ生成プログラム並びにデータマイニングシステム
> 20070239415: GENERAL GRAPHICAL GAUSSIAN MODELING METHOD AND APPARATUS THEREFORE
> 20070203870: GRAPH GENERATING METHOD, GRAPH GENERATING PROGRAM AND DATA MINING SYSTEM
